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1

Richness of human gut microbiome correlates with metabolic markers

Le Chatelier, Emmanuelle, Nielsen, Trine, Qin, Junjie, Prifti, Edi, Hildebrand, Falk, Falony, Gwen, Almeida, Mathieu, Arumugam, Manimozhiyan, Batto, Jean-Michel, Kennedy, Sean, Leonard, Pierre, Li, Ju

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 651 KB

english, 2013

2

Enterotypes of the human gut microbiome

Arumugam, Manimozhiyan, Raes, Jeroen, Pelletier, Eric, Le Paslier, Denis, Yamada, Takuji, Mende, Daniel R., Fernandes, Gabriel R., Tap, Julien, Bruls, Thomas, Batto, Jean-Michel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 603 KB

english, 2011

3

A human gut microbial gene catalogue established by metagenomic sequencing

Qin, Junjie, Li, Ruiqiang, Raes, Jeroen, Arumugam, Manimozhiyan, Burgdorf, Kristoffer Solvsten, Manichanh, Chaysavanh, Nielsen, Trine, Pons, Nicolas, Levenez, Florence, Yamada, Takuji

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 922 KB

english, 2010

4

Genomic variation landscape of the human gut microbiome

Schloissnig, Siegfried, Arumugam, Manimozhiyan, Sunagawa, Shinichi, Mitreva, Makedonka, Tap, Julien, Zhu, Ana, Waller, Alison, Mende, Daniel R., Kultima, Jens Roat, Martin, John, Kota, Karthik, Sunyae

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2012

5

Metagenomic species profiling using universal phylogenetic marker genes

Sunagawa, Shinichi, Mende, Daniel R, Zeller, Georg, Izquierdo-Carrasco, Fernando, Berger, Simon A, Kultima, Jens Roat, Coelho, Luis Pedro, Arumugam, Manimozhiyan, Tap, Julien, Nielsen, Henrik Bjørn, R

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 584 KB

english, 2013

6

An integrated catalog of reference genes in the human gut microbiome

Li, Junhua, Jia, Huijue, Cai, Xianghang, Zhong, Huanzi, Feng, Qiang, Sunagawa, Shinichi, Arumugam, Manimozhiyan, Kultima, Jens Roat, Prifti, Edi, Nielsen, Trine, Juncker, Agnieszka Sierakowska, Manich

Journal:

Nature Biotechnology

Année:

2014

Langue:

english

Fichier:

PDF, 2.38 MB

english, 2014

7

Enterotypes of the human gut microbiome

Arumugam, Manimozhiyan, Raes, Jeroen, Pelletier, Eric, Le Paslier, Denis, Yamada, Takuji, Mende, Daniel R., Fernandes, Gabriel R., Tap, Julien, Bruls, Thomas, Batto, Jean-Michel, Bertalan, Marcelo, Bo

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 63 KB

english, 2011

8

Addendum: Enterotypes of the human gut microbiome

Arumugam, Manimozhiyan, Raes, Jeroen, Pelletier, Eric, Le Paslier, Denis, Yamada, Takuji, Mende, Daniel R., Fernandes, Gabriel R., Tap, Julien, Bruls, Thomas, Batto, Jean-Michel, Bertalan, Marcelo, Bo

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 30 KB

english, 2014

9

Europe PMC Funders Group Enterotypes of the human gut microbiome

Arumugam, Manimozhiyan, Raes, Jeroen, Pelletier, Eric, Paslier, Denis Le, Batto, Jean-michel, Bertalan, Marcelo, Borruel, Natalia, Casellas, Francesc

Année:

2013

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2013

10

Enterotypes in the landscape of gut microbial community composition

Costea, Paul I., Hildebrand, Falk, Manimozhiyan, Arumugam, Bäckhed, Fredrik, Blaser, Martin J., Bushman, Frederic D., de Vos, Willem M., Ehrlich, S. Dusko, Fraser, Claire M., Hattori, Masahira, Hutten

Journal:

Nature Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2018

11

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J., Arumugam, Manimozhiyan, Asnicar, Francesco, Ba

Journal:

Nature Biotechnology

Année:

2019

Langue:

english

Fichier:

PDF, 516 KB

english, 2019

12

Insight into Structure and Assembly of the Nuclear Pore Complex by Utilizing the Genome of a Eukaryotic Thermophile

Stefan Amlacher, Phillip Sarges, Dirk Flemming, Vera van Noort, Ruth Kunze, Damien P. Devos, Manimozhiyan Arumugam, Peer Bork, Ed Hurt

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2011

13

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

Zoetendal, Erwin G, Raes, Jeroen, van den Bogert, Bartholomeus, Arumugam, Manimozhiyan, Booijink, Carien CGM, Troost, Freddy J, Bork, Peer, Wels, Michiel, de Vos, Willem M, Kleerebezem, Michiel

Journal:

The ISME Journal

Année:

2012

Langue:

english

Fichier:

PDF, 3.84 MB

english, 2012

14

Consistent mutational paths predict eukaryotic thermostability

Vera van Noort, Bettina Bradatsch, Manimozhiyan Arumugam, Stefan Amlacher, Gert Bange, Chris Creevey, Sebastian Falk, Daniel R Mende, Irmgard Sinning, Ed Hurt, Peer Bork

Journal:

BMC Evolutionary Biology

Année:

2013

Langue:

english

Fichier:

PDF, 725 KB

english, 2013

15

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline

Manimozhiyan Arumugam, Chaochun Wei, Randall H Brown, Michael R Brent

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 290 KB

english, 2006

16

SmashCell: a software framework for the analysis of single-cell amplified genome sequences: Fig. 1.

Harrington, Eoghan D., Arumugam, Manimozhiyan, Raes, Jeroen, Bork, Peer, Relman, David A.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 535 KB

english, 2010

17

An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples

Bag, Satyabrata, Saha, Bipasa, Mehta, Ojasvi, Anbumani, D., Kumar, Naveen, Dayal, Mayanka, Pant, Archana, Kumar, Pawan, Saxena, Shruti, Allin, Kristine H., Hansen, Torben, Arumugam, Manimozhiyan, Vest

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2016

18

Interplay between FGF21 and insulin action in the liver regulates metabolism

Emanuelli, Brice, Vienberg, Sara G., Smyth, Graham, Cheng, Christine, Stanford, Kristin I., Arumugam, Manimozhiyan, Michael, Mervyn D., Adams, Andrew C., Kharitonenkov, Alexei, Kahn, C. Ronald

Journal:

Journal of Clinical Investigation

Année:

2014

Fichier:

PDF, 683 KB

2014

19

Interplay between FGF21 and insulin action in the liver regulates metabolism

Emanuelli, Brice, Vienberg, Sara G, Smyth, Graham, Cheng, Christine, Stanford, Kristin I, Arumugam, Manimozhiyan, Michael, Mervyn D, Adams, Andrew C, Kharitonenkov, Alexei, Kahn, C Ronald

Année:

2014

Langue:

english

Fichier:

PDF, 2.66 MB

english, 2014

20

Towards affordable diagnosis based on human gut microbiome: Colorectal cancer as a case study

Arumugam, Manimozhiyan

Journal:

Toxicology Letters

Année:

2017

Langue:

english

Fichier:

PDF, 43 KB

english, 2017

21

Publisher Correction: Enterotypes in the landscape of gut microbial community composition

Costea, Paul I., Hildebrand, Falk, Arumugam, Manimozhiyan, Bäckhed, Fredrik, Blaser, Martin J., Bushman, Frederic D., de Vos, Willem M., Ehrlich, S. Dusko, Fraser, Claire M., Hattori, Masahira, Hutten

Journal:

Nature Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 562 KB

english, 2018

22

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Kultima, Jens Roat, Sunagawa, Shinichi, Li, Junhua, Chen, Weineng, Chen, Hua, Mende, Daniel R., Arumugam, Manimozhiyan, Pan, Qi, Liu, Binghang, Qin, Junjie, Wang, Jun, Bork, Peer, Gilbert, Jack Anthon

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 342 KB

english, 2012

23

Genes controlling the activation of natural killer lymphocytes are epigenetically remodeled in intestinal cells from germ-free mice

Poupeau, Audrey, Garde, Christian, Sulek, Karolina, Citirikkaya, Kiymet, Treebak, Jonas T., Arumugam, Manimozhiyan, Simar, David, Olofsson, Louise E., Bäckhed, Fredrik, Barrès, Romain

Journal:

The FASEB Journal

Année:

2018

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2018

24

Trust is good, control is better: technical considerations in blood microbiome analysis

Schierwagen, Robert, Alvarez-Silva, Camila, Servant, Florence, Trebicka, Jonel, Lelouvier, Benjamin, Arumugam, Manimozhiyan

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 482 KB

english, 2019

25

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J., Arumugam, Manimozhiyan, Asnicar, Francesco, Ba

Journal:

Nature Biotechnology

Année:

2019

Fichier:

PDF, 1.16 MB

2019

26

Perturbation of gut microbiota decreases susceptibility but does not modulate ongoing autoimmune neurological disease

GÃ¶del, Clemens, Kunkel, Birgit, Kashani, Alireza, Lassmann, Hans, Arumugam, Manimozhiyan, Krishnamoorthy, Gurumoorthy

Journal:

Journal of Neuroinflammation

Année:

2020

Fichier:

PDF, 1.32 MB

2020

27

The intestinal microbiome is a co-determinant of the postprandial plasma glucose response

SÃ¸ndertoft, Nadja B., Vogt, Josef K., Arumugam, Manimozhiyan, Kristensen, Mette, GÃ¸bel, Rikke J., Fan, Yong, Lyu, Liwei, Bahl, Martin I., Eriksen, Carsten, Ãngquist, Lars, FrÃ¸kiÃ¦r, Hanne, Hansen,

Journal:

Année:

2020

Fichier:

PDF, 1.35 MB

2020

28

Utilizing the gut microbiome in decompensated cirrhosis and acute-on-chronic liver failure

Trebicka, Jonel, Bork, Peer, Krag, Aleksander, Arumugam, Manimozhiyan

Journal:

Nature Reviews Gastroenterology and Hepatology (formerly Nature Clinical Practice Gastroenterology and Hepatology)

Année:

2020

Fichier:

PDF, 2.52 MB

2020